Scaffold DelMOSum2011_c10069204

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10069204
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1282
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium TMED32 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076499	Metagenome	118	N
F081752	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100692043	F081752	N/A	MIDISIYDIIAAVVGILLFWILVYSSEKDKFDDKDEKMKFRSWCQAWWNKNNDNVLAHFFVTAFLLIIGIENTRNLLSEYFDIPAGMDGLGASGLIGFSGSLISDLLKRIIKTVKK*
DelMOSum2011_100692044	F076499	N/A	MNKTSIIITMAIALGVMTLIATKQQFKVKVVTITENHTDTLFIEKPADTVFLDKVRYISKPIHDTVYVDQEGQLITNYSGEFFVDSAVTVLYNIDVKGMIQGFNFGAVKNYPPQEVITKTITNIVTEYQSMEYKALWAVLGMDMMGNPTIGLDFQNHNKVFGVNFNPIDKVIGFNYKLRLFK