Scaffold DelMOSum2011_c10036193

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10036193
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2117
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011190	Metagenome / Metatranscriptome	294	Y
F072848	Metagenome / Metatranscriptome	121	Y
F096226	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100361932	F096226	GAGG	MSLSRKDLENIICIACSRKYKEHYKGNGTKFNLPELMSCMFRIQGTLVADGINNEEPKA*
DelMOSum2011_100361933	F072848	GGAGG	MPSIINNDKINVGFDILDEAMNNMINTHKLNFYEVLTVLAMMDTKVKQNNISQYLIETVTRFQEQANKEDEELR*
DelMOSum2011_100361938	F011190	GAG	MFNKESSMIRNFINGLKKSFSGKDYLREINQCNKCGKPSFFDSCLKCETDDAYRGWNSKNLR*