Scaffold DelMOSum2011_c10027249

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10027249
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2590
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025614	Metagenome / Metatranscriptome	201	Y
F039873	Metagenome	163	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100272493	F025614	AGGAG	VSKKINIENLNIFNHPRYMKVWAQQFSKACGSDTFNVAPDTITLRYLMEKFVKDYNFHLEGLEEE*
DelMOSum2011_100272496	F039873	N/A	MDDIAQIREEAFKRAGNACEWANCGSSKWLELAHLKDIGMGGNKARKYNVDNTAVLCKWHHDIYDGRQSMGTKVAYRELLEGYLDRHSGVS*