Scaffold DelMOSum2011_c10021105

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10021105
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3088
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020385	Metagenome / Metatranscriptome	224	Y
F030154	Metagenome	186	Y
F046471	Metagenome / Metatranscriptome	151	N
F063160	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100211052	F046471	AGGAG	MTEECQECQGEGVCEYERWEKYGDTYEPYAEYKACENCNGTGQTESEHD*
DelMOSum2011_100211055	F030154	AGG	MLVGNNRALLINTTQGVLIMTYTIATRPIGSTFQFVPVVGFILMTIKQAQELAQEYRASGIDAVAFNTQVGV*
DelMOSum2011_100211057	F020385	AGGAG	MKPSFKEILAQRQEYLDALKSKGDMYALGFLESSFLYHMGDSGLEPLNPSQLETLAKWKATTQ*
DelMOSum2011_100211059	F063160	AGG	MKEYIAILCDELGEEFSVTVSVPDLVENVTEYVREEYPESSIVYIMPKGF*