Scaffold DelMOSum2011

Basic Information
Taxon OID	3300000115 Open in IMG/M
Scaffold ID	DelMOSum2011_c10015941 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000115 Open in IMG/M

Scaffold ID

DelMOSum2011_c10015941 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3734
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3734

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.848917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.848917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010604	Metagenome / Metatranscriptome	301	N
F054676	Metagenome / Metatranscriptome	139	N
F081060	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100159412	F054676	AGG	MAITIQDQPTTTYVLPAFAPIEYLLSSTNTAQPGFKIICKVYLNPTGANTLISTQQISVRPLTTQAILSIQDVVKSFVPITYSVPSGDTVGLISDTLNEFKVTFQEYYDSALQGSIVASNIISSYAASPKYIQFAANDWQDYQLATSAIEKNLLSNFSNTIPVINAFSSANNWLKVKTDQKTQIQWLQSGASANFRVWLKTLDASFNQISLSQLDLTTTAKGYFALDIGRQEASAHAWDTPIVWTAAKYYAVAIYDESTTELVSNAYLYELDDCNTNYTPFELHWLNRWGGFDSFVFDGKSNQTTEVNKTFAKYSPDRISGTSLNYSTSAQRTRTFNTATRESYNLNSRLLQDFEVKGLEDLVTSPEVYWRSEAGFVSVNVSGNTYQHAKSENGLVYSLALDMVIDNSDERQW*
DelMOSum2011_100159413	F081060	GAG	MQNKLYANLDKYWQTVVDDLVQSLKDVGRYASGNTAQAIGDGNAQPVAITANGFKITIAMPSYYEYLDEGVSGAKNNTGISRFKYTNKMPPIKAIRKFMLNRGINAPRSSNTKSGKRQDAEKIRNGIAFAIARSIFNNGTKRTDFYSNVINDKKLIAFEQMLLAQYSNYVIELIKIV*
DelMOSum2011_100159415	F010604	N/A	MEHTRLSKMTVGQYQLLNEIDGELPVMEQNIYAVAAIKDITYEEASKVKLKDFAVMIAELGEFNIKQLEKLKINSRVILNGSVYHIEHKPEKLTSGQLLDIINIRSKYQGEGVKVMDLLLAAISKPEGKNYGDDNLTLNERAALIRSTELDKVWNIFVFFWNLWNDYLNNTEDSLSKWMKDTLAMTREILGNDGDYSA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOSum2011_c10015941

Overview

Ecosystem & Geography

Associated Families

Sequences