Scaffold DelMOSum2011_c10007173

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10007173
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6251
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001283	Metagenome / Metatranscriptome	731	N
F003110	Metagenome / Metatranscriptome	506	Y
F014130	Metagenome / Metatranscriptome	265	N
F025281	Metagenome / Metatranscriptome	202	Y
F041088	Metagenome	160	N
F053138	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100071731	F003110	N/A	MKQVLLAALLTVGKLASAQTSVIQSTSICIQDSIHTPAELYKADNIRLNTLYRELQLCDSLRILELYELQDQKQISIQYKKSLDLKTQMLKNSAADSRDKLMKLRKTRKVLSWTIVAVVFEGFIIYIK*
DelMOSum2011_1000717311	F014130	N/A	MDKRYTFELVLNLDNKYYTTNLMAGYGSNPDNAMDNLKAKLNNQFMMLKEDNYNFTIGSIKHITP*
DelMOSum2011_1000717313	F001283	N/A	MTTQEAKETLNKPFICKEAERSIREMKIKLSKYTGDKSEQTKHLSNLDNLLNLAHKQAIDIDTYEDLLAQYLFKIGEQQAKIRELIEMHAISEHIHEVGIDEVVKDFKSKLQLR*
DelMOSum2011_1000717315	F053138	N/A	MIGLFEVSATRAGKTISCTMFGNMAEKEQLFGELMNQHKIDQSERHLWKLTNIT
DelMOSum2011_100071733	F025281	N/A	MTITIKYFGVTYSIETKTDDLNATEMLETFTNLMKCIGFQQSSIDGAIMELNEQIDL*
DelMOSum2011_100071736	F041088	N/A	MKPAIELYISTVRLLTIMDMVDMPNNGFKKAIRSIEDWAAKQSYILEDMDPEAHERIIHNFNVIMDSIDHEVLSTPIGELTVEAN*