Scaffold DelMOSum2011_c10004133

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10004133
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8689
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019751	Metagenome / Metatranscriptome	228	N
F050004	Metagenome / Metatranscriptome	146	Y
F065664	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_1000413310	F019751	N/A	VRNHLTRTRGPDLSKDFHDYISSQWMFFGRNAYQIAEQINKDTQLMSKYGKTTPSGVHYHIKQIQQEMENSISEDAMDTYIGEFIRARLGFEQDVIALEEIMADEKSKGFDNMDKELYLKFARTRHEIKLDSFKMLQDSALPLQVKKLKMERAKLRPARPMPEVEDNGVSE*
DelMOSum2011_1000413312	F065664	N/A	MAGVAEIMCEYGAGDKVLQLEQFDTMGFYEYYGVTETFKNLQSLIKRAEDIQTSYDKIVIHDYSEFKLNFPKNKVVLIFHGSKLRGLDDNEIESVKEYPCFVTTSDLLDILPFATHLPAPLDRELFKKDVEGYGWIAINRSYQRDFVEKRIKDRYPDVEYYERNAGSIIRYEDMPDFLSQYKHYVDWKFTNDXEPVSLPDPSCTGIQALALGLTVHDKDGGTLSPHLLLIHDAKRVVQRFMDEIT*
DelMOSum2011_100041336	F050004	N/A	MVLYLKLDQNVWAQRDFTDSALYDLTGTVYDDNTLTTVRDISAFTGTLRLIDQNGELIFSTQQNLTLNSDGTFLVKFGQGLSPVVQGTYQVRLRLEVSGTRLTCVGVNGSDQIYFEYD*