Scaffold DelMOSum2010_c10080969

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10080969
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1439
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033251	Metagenome	178	N
F069345	Metagenome / Metatranscriptome	124	N
F082525	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100809692	F082525	AGGA	MDFKIKTGVPIPDISLGKKRGRGKWQVLLSSMSDGDCVDVPLRSYNSIYVAASRLGITLMSRREGDGLSDGFVRIWRVSDG*
DelMOSum2010_100809694	F069345	N/A	MMIDCPECSHSDRKGEVEHEQFEMTSYGVYEPFGVWKTCENCSGSGEIEAD*
DelMOSum2010_100809695	F033251	AGGA	MADKKKRNLTPKKRAMLRWTGKEIDQLLEYKATGFSHSEIGELMGRSTKSIHVKMSKIRLGVEKASNPVDDLTPFQKNLDSTLFGDVSPDDKPKKPRKPRATKLSLTPKPLVTDAFNVPKKPVYVAVVLALVIVAWYLGSMS*