Scaffold DelMOSum2010_c10042254

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10042254
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2366
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022653	Metagenome / Metatranscriptome	213	N
F022837	Metagenome / Metatranscriptome	212	N
F032261	Metagenome	180	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100422545	F022837	GAGG	MVTTKGGDTMSQLHLRMRFKDHEYHTMHDGELILFNLEDYQPYEPENCLHEAYLFCDIIIDDKPVDHYALTASQYDAMTATVEEGSYYEY*
DelMOSum2010_100422546	F032261	AGAAGG	MNIDTEADYVLEAYWWSHKLVNNVSRRNKKFVLAYITAYRDYEDDESECIQLTEMLQLKDKLVSVYGSHPDGEVVVELTIRQEFVNV*
DelMOSum2010_100422547	F022653	AGGAG	MNIFKKLWLFVCLETRGLLSDLLSGNLTDTEKDSLFWIFVTLWGLVMVTFFILHESTGAVFDL*