Scaffold DelMOSum2010_c10037920

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10037920
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2554
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006528	Metagenome / Metatranscriptome	371	Y
F008385	Metagenome	334	Y
F030249	Metagenome	186	Y
F032444	Metagenome	180	Y
F105916	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100379201	F008385	N/A	MNKTNIYGDYKVCIKCKDPADVIEGTKDYCIECWHDHVNNGKSFKEVDKQIKEEERFIKKK*
DelMOSum2010_1003792010	F032444	N/A	LQYRSKMIQVIMFKTNQQKERNMTKFKTKIQYVSWNDSVKGSAKAADTKKTKLENQGYILVSTQAGLFSGLMVYKNPNYKKGQ*
DelMOSum2010_100379202	F006528	N/A	MTDKEKLLTDIELEKLKIATFKNIIEGSKSINGVTWNRIKNYKRKDKIQCLKQLSQ*
DelMOSum2010_100379203	F030249	AGGGGG	MTRNKFGLPLIFDYVKLTDDRRLKNLEHMIHNCPKGWKELWSKKLNQLRKNIHDRQRKTLN*
DelMOSum2010_100379204	F105916	AGGGGG	MKDIIKQVKNDKGIIFNAKIYKDKIEKDWFITFYDSRYKKGFNKLGQGIASYYVGTILNRKGYYGNSNKDSGLDLYGGESDWYIDFKPYQKLVKFLEKRGLVNDKK*