Scaffold DelMOSum2010_c10023864

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10023864
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3501
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008722	Metagenome	329	Y
F019923	Metagenome	227	N
F024922	Metagenome	204	Y
F081885	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100238643	F008722	AGG	MKKKITMEEAIERILIAVEYYDMVHDTGEEEETDKNIDYVWKGYDRLIEIEKNQQASEQRG*
DelMOSum2010_100238647	F081885	AGG	MKINVDKNLLFLKKDKGKKVYEIEAEIQRYLKFQVVAENKDEAFEKYLNHADVEVVNNTMSTEIVLSDQDEYDQYHDTKCIGIIKIDEDNDPYVSDEIKKDKPLILTKDMEVK*
DelMOSum2010_100238648	F019923	GGA	MAVDFEALDHVRAKNRARVHEEQKQMRVELTEYIDKCNTYELSRLYDECRRLKRK*
DelMOSum2010_100238649	F024922	AGG	MNAEDLNENRLLTKKDFDSFFDGHNEYEFKKMSINKLRSTYGVTHLINGKYKDMRGNCFKCLMPLRADYSHHKNYCMDC*