Basic Information | |
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Taxon OID | 3300000101 Open in IMG/M |
Scaffold ID | DelMOSum2010_c10018361 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4159 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
Source Dataset Sampling Location | ||||||||
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Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
Coordinates | Lat. (o) | 38.84917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F050661 | Metagenome | 145 | N |
F071140 | Metagenome | 122 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
DelMOSum2010_100183612 | F071140 | GGAG | MNMSVKKESEMDFNNDLAFDLTVSMMRNYAKDCLVDKDMEMMDPMAGSYLLVHNLVVGLLVKAEGFESELINICHSAIEDAEFRLNKSKGE* |
DelMOSum2010_100183614 | F050661 | GAG | MSNKIRFYAFRSYDDEFGVRFIPYDATKFELKAITSNFDANALFNKMKANCEGYVPAYNPDKNYTENLQDLQAKVGFWPIPLSHQSVYEDIPIEYDDEWTEETSXPNYKHRWELEDRKEYYFPPKDEPPF* |
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