Scaffold DelMOSum2010_c10017472

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10017472
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4301
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020600	Metagenome	223	N
F036433	Metagenome	170	N
F056069	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100174722	F020600	AGGA	MTNNTDLIFPRTTQRLPADVLLPGAEKKLGKAMLEYEREQAKRVRRQVLPCDRTYVRRQVNDDAINLLNEMRKAGPCTAKYLAERLSISTHKSANLIKSLTVAGLAEKVCITRRSTVQEDNLPYLTGHRERNDCWVYKAWEQ*
DelMOSum2010_100174724	F036433	AGG	MVRKKKKSKPLNEARSRADHGTPEALKQADGVQYETVDGGRLGSVKRAYISRQTPMDRYRARGLVSQRQYDAAHAFYVLYDKTRQAGRVTSNYDRIIVDGGGSGSGINEYAFSDYINLSHKLGYDYVSVVRAVVVECESANSWAKRYRLPSRMGIERLRDGLDKLANVMGIS*
DelMOSum2010_100174725	F056069	GGAGG	MIKKSKTVNKRVMQKIVDKLAEGITLTEICQADDMPSYRSITRAVQLDEDLWELYRKGRVQQAEFYTDRINQLAMSPLPDVDDQRKLHAEVNRRKLEIETLKWTTSRNQPHGVRDKKEDAPQQQAITISWAGGDVDVSADG*