Scaffold DelMOSum2010_c10015748

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10015748
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4606
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002151	Metagenome / Metatranscriptome	589	Y
F006008	Metagenome / Metatranscriptome	384	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100157481	F006008	AGGAG	MPLVKKRLFLTAGSTSEQVLSGTTYEYVDANTVIRVAAAVDT
DelMOSum2010_100157483	F002151	N/A	MEYVNFIALGCSFVALVLSLIACARVGKFVKATADTDWETLANLTGDIAALKRTCQTLNNRLNGMNKATIPQEQIIQQMLQHQNVEPIARGG*
DelMOSum2010_100157487	F002151	N/A	MEYVNYIALVCSIAAFAMSLIACGRVGKFVRATAETDWETLANLTGDIAALKRTSQTLNNRLNGMNKAVVPQEQIIQQMLQHQNVEPISRGG*