Scaffold DelMOSum2010_c10013561

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10013561
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5082
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020385	Metagenome / Metatranscriptome	224	Y
F030154	Metagenome	186	Y
F046471	Metagenome / Metatranscriptome	151	N
F063160	Metagenome / Metatranscriptome	130	Y
F070310	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1001356111	F020385	AGGAG	MTMKPSFKEILAERQEYLDALKSKGDMYALGFLESSFLYQMGDSGLEPLNTAQHSTLAKWKEESAQ*
DelMOSum2010_1001356112	F063160	AGGAG	MIDYEVMLEDATGNVEEFTVSVPDLVENVTEYIREEYPESSIVYIMPKGF*
DelMOSum2010_100135613	F070310	AGGAG	MTEELEQELRMLGVLDHKTPAVEIDAEPMWIRDDVVFDEDGQPNF*
DelMOSum2010_100135616	F046471	AGGAGG	MEECQECQGEGKVEYERWERYGDTYEPYAEYSICEWCLGTGQLESDDD*
DelMOSum2010_100135619	F030154	AGGA	MTYTIATRPIGSTNQFTPISGFWGSKPRLMSLKQAQDLAQEYRASGEIEAVAFNTQVGV*