Scaffold DelMOSum2010_c10012639

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10012639
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5312
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005178	Metagenome / Metatranscriptome	409	Y
F049285	Metagenome	147	N
F065691	Metagenome	127	Y
F081883	Metagenome	114	N
F090997	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1001263910	F090997	GGAG	MRIRVLAEETTYLECFVDVPEEIVEQSKVRLSKTYLKNAIHNWIDENFGELNYLEYDTDFNWYTWEEVDEEWNNEH*
DelMOSum2010_1001263915	F065691	AGGA	VSIYIPEPITILLVVLSLLAGFLYRKYNDKEDIADAFDEGYEKGRKDVVRLLSELTGRDLQIELERGDLDR*
DelMOSum2010_1001263917	F005178	AGGAG	MMYVLVWMQLFSTQTVEHYQLGNYATIEECQIELSKAAKMVTHKSETVACLEVEVQQ*
DelMOSum2010_100126397	F081883	GAGG	MTPKIEKIYNLIYYSDFDEYEIKQLVIGLLGKSLTESSWHQAANTVSSYKIDDERAWYSKPKKDE*
DelMOSum2010_100126399	F049285	GAGG	MKLIKVRVNKTVEYEVSVPVQDDHNYEQVFDYLQTIDWDREIEVSPQNYKHIAEYYDWLDWETEE*