Scaffold DelMOSum2010_c10007245

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10007245
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7544
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003196	Metagenome / Metatranscriptome	501	Y
F003423	Metagenome / Metatranscriptome	487	Y
F077364	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100072452	F077364	AGGAG	LVKVYRKDLDGFYEVSEARATELEQAGYSRTPQQSETVSSAPANDGRTAVQGMNIASNIFGFMPDDVLKAFSAEWVKSGNADIAIGATRQTKAWKDNFGKLMRDDGTLVMDELSFMGVKASYKQTLAEVGIADFTDFEDEFTDMATGYETGDPVSAEEFQVRVDTVYAGVKDQIPEVEKLFRDRYNLTLDQPTIFAALINPKIQDKVLAGEIATIQLQAQASSRGFTTSFARFDELRKMGLTSAQAGQLYEGAGGMISQAASIGRDLSLETLEEATLGDELSSKRLQRISAELQSKQGIQLGSAKKGDEVTGLIAD*
DelMOSum2010_100072453	F003423	GGAGG	MEEFDAPQEHGVKQLRETVERKDEQLKKLEAELASFKDKELNNVFGKLGLQTENGFGKALKQVYNGPVDIESISQFAKDEYGYEPKTQVQEQAQPEPEQIVQDDARSRVAALDANSVSDVPAGVDEQLAHILKNGSVKDSLTAKLNLMENQKNDK*
DelMOSum2010_100072455	F003196	AGG	MQLQKEVLIDVSANATTSSAAQCDGLLLSGIVFPATMTGTTVTFDFSFDGTNFVDVVETDGTEVSYTVTAGDVVRVDPSGWAFASLGFLRIVSGSSEAADRTINLIFKQS*