Scaffold DelMOSum2010_c10005290

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10005290
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9113
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (95.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059009	Metagenome	134	Y
F074736	Metagenome	119	N
F086825	Metagenome	110	N
F098879	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000529013	F059009	GGAGG	MKDDELPDCYVQANDDYYVCYVMEYNDHEHMDIEERILGEILEITRRCRICGQCDVYYPV
DelMOSum2010_1000529014	F086825	AGGTGG	MYIKESYVYTLPADMNDPEGPTRWVGCSSGDCGYERTADDSSYMIRMKPVLLRMFKVNGRQVCEGCLKEWRASITEWIE*
DelMOSum2010_1000529022	F098879	GAG	MATKKTAMFTLTERVTISAANTTTFASIDLGSYVDVGDRQALQIHSVDFIHQGTTAVENFPQA
DelMOSum2010_100052903	F074736	AGGTGG	MSRTVMFDKVMRGGSFTYTASGTTWSSDGPWEYIDSNVLYSQEEIDIGGMTTTQEETFYPEAATIQNSPFYTVPGVVLRDPGDPDSGLVPYGALFEYVLITESPFKVDKWVADQTYTGDGTSWIPVYSCPGIDPRRTTDQATTLGFDNVLYGRVQMIVHNSSLPQQAGVVYSTNEFGSMTPTASDRLYVTRFVVIQPLGGQNIPNGSGIQLPHMRVILVGSGKEENDLSYIMRLRNSYLLQQDVN*