Scaffold DelMOSum2010_c10005057

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10005057
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9353
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007723	Metagenome / Metatranscriptome	346	Y
F021182	Metagenome / Metatranscriptome	220	Y
F023218	Metagenome / Metatranscriptome	211	Y
F031507	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000505716	F023218	N/A	MIFPSNKRKARYINKQLYLVHAVIPIDRVKNPTMIKEWLGVDTAFKVQREGAYWFCELVEEPEWEDVN*
DelMOSum2010_100050572	F007723	N/A	MIKSIKSKLLTYLFKDWVNNETDLETLQVSKQFIKKREIEITGHVPVMGFRSHTTQ*
DelMOSum2010_100050573	F021182	N/A	MANVKYPEGYIPKIQYWTSKLNDELNNTKVPSIRIIDSIHRKLDFFIQKEWNRTVTSK*
DelMOSum2010_100050574	F031507	N/A	MNVKINSKVSFENKYGQIQEGIVTDNNYQCEFDADLNGCVRVSVDYGSSIMGSINTLIDKSQIINL*