Scaffold LCrCPGB2aDRAFT_c001710

Overview

Basic Information

• Taxon OID: 3300000095
• Scaffold ID: LCrCPGB2aDRAFT_c001710
• Source Dataset Name: Soil microbial communities from Colorado Plateau, Green Butte sample - Light Crust, Colorado Plateau, Green Butte 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3660
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054580	Metagenome	139	Y
F094354	Metagenome	106	Y
F094653	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
LCrCPGB2aDRAFT_00171011	F094653	GGAGG	MSAREVLEELDRLMISIFYRPLGPGQDPGAGISVGVGRERAYPELLRALEERTPELLKMAHFEPSRHTPGTYLRRPGGAE*
LCrCPGB2aDRAFT_0017103	F054580	N/A	MGKCTAITRGGGRCKGVAMDGSGLCYSHHPDHEQDRRRAARKGGKRGGRGRPTSELARLGVRFEELADKVLSGEVERAAGAVAGQLLNGARACVRDGLAAREQEELEARIAALEADTAAKGERWGA*
LCrCPGB2aDRAFT_0017109	F094354	AGGA	VSVLFALVVSLCASVAVFLFVIMWLDRDFVAAVALAFALFPLLVLTIMAWREAL*