Scaffold IMNBGM34_c042772

Overview

Basic Information

• Taxon OID: 3300000036
• Scaffold ID: IMNBGM34_c042772
• Source Dataset Name: Passalidae beetle gut microbial communities from Costa Rica - Gallery material (4MSU+4BSU+3MSU+3BSU)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 588
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → unclassified Dechloromonas → Dechloromonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Midgut → Unclassified → Passalidae Beetle Gut → Passalidae Beetle Gut Microbial Communities From Costa Rica

Source Dataset Sampling Location

• Location Name: Quebrada Gonzales Sector, Braulio Carrillo National Park, Costa Rica
• Coordinates
  • Lat. (^o): 10.207151
  • Long. (^o): -84.007673

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005246	Metagenome / Metatranscriptome	407	Y

Sequences

Protein ID	Family	RBS	Sequence
IMNBGM34_0427721	F005246	N/A	AMEYFLAGRRVIVAKFVAHRHKEVQNKAKKVVGIVNLYEVQCADGKAPTVQTWCPRNVQTVEQAAAECSCVFKDGQRLVVEFDSMEPNHFDAKNGVIIRAVSVLPLE*