Scaffold ICChiseqgaiiDRAFT_c0764498

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ICChiseqgaiiDRAFT_c0764498

Scaffold ICChiseqgaiiDRAFT_c0764498

Overview

Basic Information
Taxon OID	3300000033 Open in IMG/M
Scaffold ID	ICChiseqgaiiDRAFT_c0764498 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1941
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)	.1016
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053880	Metagenome	140	N
F066815	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
ICChiseqgaiiDRAFT_07644981	F053880	N/A	VVMEEPKKVGASVAALLALFLAVPTQAAPFDEKLKTPRVTTAQALRQKFEAHFATFEHKLQDPDPAAFIRDTVAYKQWSDLYFSVQLAIDEKIPLKGLSTFGLVARPDGRYTVDLHEYPQWEPLDSRLHRLTNEEVVEDYVPALKARGFRXEDIXALRTYLAXXXPXXTLQAEGRQLVXTFAQRLQTQXXAGXXLXLQXVLAYRYQKXXLXAEAERRWAVGLMDALDLQRQRILVSFLDEFQSDMTFGAPAAPLDATLERESQPIVSGEYVQILTTEEAQLRQRMQRRAEKLMGGERR*
ICChiseqgaiiDRAFT_07644982	F066815	GGAGG	MNTCMRVLAALSFVLVCGQAAAVPTLKKVTPTFNQAGNGALSVGLVVEASTSLPVLIIAGGFTITCTTSTLPLTVERRATFTGFFSINETLRIPATVPSTYPIPGWASLPTGACAQCLMQYRGEAKDESSLSIRVGNQGIGANFTLIPAGEHAEGNVILTDVCRTPRRQCCTPGCVIP*

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