Basic Information | |
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Taxon OID | 3300000032 Open in IMG/M |
Scaffold ID | Draft_c0002912 Open in IMG/M |
Source Dataset Name | Oil sands microbial community from Northern Alberta which degrade Naphthaline |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | McGill University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 25290 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (81.48%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Syncrude tailings pond, Wood Buffalo, Alberta, Canada | |||||||
Coordinates | Lat. (o) | 57.02 | Long. (o) | -111.55 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018395 | Metagenome / Metatranscriptome | 235 | Y |
F020198 | Metagenome | 225 | Y |
Protein ID | Family | RBS | Sequence |
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Draft_00029124 | F020198 | AGGA | MITIPAKKIKSREATMTYLLDPTRLKTLIMDLRSNLKSTQHLCIKEGYEDNPRKCVHSGYHEWPECVPFRRFNHFCYEQGLDWEGCRGMMEIMLNDRFLCECEMLWRYSDEQLEEILAGRRR* |
Draft_00029126 | F018395 | GAGG | MSSGMKLDRADTVYEERARLLLLKNRNWLRHGKNTSAGKMDEMLFDGATVEQLTKRARTTKGAVYVHLSHLRKVHKLVIVRKDGTFRYDLEGMKGEEKVKRKSRKGKE* |
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