Scaffold CowRDRAFT01_c0140022

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold CowRDRAFT01_c0140022

Scaffold CowRDRAFT01_c0140022

Overview

Basic Information
Taxon OID	2236876025 Open in IMG/M
Scaffold ID	CowRDRAFT01_c0140022 Open in IMG/M
Source Dataset Name	Switchgrass-associated rumen community WFO
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	718
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Stomach → Unclassified → Switchgrass-Associated Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location
Location Name	Urbana
Coordinates	Lat. (^o)	40.1	Long. (^o)	-88.26	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028722	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
CowRDRAFT01_01400221	F028722	GAG	MEERHVEIARSDYNIEDQYSAAHKDAMSDGDPQGKGTGHGGHTAFLPDCTKPVGQINYSNFDTAKGGGYYDINGRNDIGGRLKSMAASLYNENNQYGLDLINTEANIADGQTFVS

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