Scaffold none_p017211

Overview

Basic Information

• Taxon OID: 2236876003
• Scaffold ID: none_p017211
• Source Dataset Name: Estuarine microbial communities from Columbia River, sample from South Channel ETM site, GS313-0p8-ETM-15m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of South Carolina
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 543
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Columbia River estuary, South channel near Astoria
• Coordinates
  • Lat. (^o): 46.249
  • Long. (^o): -123.986
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013514	Metagenome / Metatranscriptome	270	Y
F057309	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
none_0172111	F013514	GAGG	MSINLEELQKYLDDNNITFEEWMRKNMITDEERKYFDKIWVDAIYKNLGEDT
none_0172112	F057309	GGA	MTNPLIDKYFELYPEKKEKPKLPRIEDYKGEETFADELKKLRDTSTIPVSKIKSYDLDDLKASFQQVAEQLQNDKAQVVSMNMEFGDYMNKITFEVYVYKP