Scaffold INPgaii200_c1195963

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold INPgaii200_c1195963

Scaffold INPgaii200_c1195963

Overview

Basic Information
Taxon OID	2228664022 Open in IMG/M
Scaffold ID	INPgaii200_c1195963 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	3700
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016860	Metagenome / Metatranscriptome	244	Y
F028339	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
INPgaii200_11959633	F016860	AGTAG	MAGRRTKASVKVNRLPPGSPLGTFGTGGIPQQYLHGTTANIYNNTPLALLGPKWDELLAEARSLSSAGQHAIAIIIAAAAGEWATEFLLERLMDTVKDHSKSVRDLIDMSERMLVTWSFEGDRVREAFRDLTGENPDRQSWWGDWIWSRRQRHDIAHRGVLTANATAAKKCIDVAALHIAYLTEVVKRRAP
INPgaii200_11959634	F028339	N/A	GDSNMKWIVLGCATLVAGCPNFPPADDRSFPGAGQLAGDERRDSRALELAESNCISQGKDVDAGRVEGQMVYDCVARQP

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