Scaffold INPgaii200_c1174514

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold INPgaii200_c1174514

Scaffold INPgaii200_c1174514

Overview

Basic Information
Taxon OID	2228664022 Open in IMG/M
Scaffold ID	INPgaii200_c1174514 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1479
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008444	Metagenome	333	Y
F010880	Metagenome	298	Y

Sequences

Protein ID	Family	RBS	Sequence
INPgaii200_11745142	F008444	AGGAGG	MPVQHAYTMKAGTKSKLLLVYATSADGASGKTGLARNLSAGSAAYIREGDSAARNVSILEGRVGEWGAGAFAEVDPELLPGVYQFGAPDEMIAEGSARAVLLIRFPKTVIKPIEINLVAYDPQDAERIGVWSLAGHKRHEFLRQALPRFTEMELALGEQAEKELKAKLGAKKES
INPgaii200_11745143	F010880	N/A	MSYALKKGTTSKILLVYALDSADMRSGKTGLNSRTPDSSAAYIREGEAQVRQIPLIEGKLGDHRAGSFVEIDSKLLPGVYQFGVPDEMLAAGSETVTLMLKFPGAVIEPISIHLVAYDPQDADRLGMSALGPEGRRAALRGAFPRLTAKELGEAGNVK

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