Scaffold INPgaii200_c1100419

Overview

Basic Information

• Taxon OID: 2228664022
• Scaffold ID: INPgaii200_c1100419
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1501
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005163	Metagenome / Metatranscriptome	410	Y
F063046	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
INPgaii200_11004192	F005163	GGA	MRYIAIVALAFAFTGSAHGASNDPKATRKGGEEDTASKAAQGTAQQIAKPEIYWLDSAYRRSDGALIQEQREFLRNKGDPRFLPPFSSLAECEAEAKYRXXWRGGRDSPVFERADCRPTAITRKMLNAVRKDYCWDHPKRPAWERPECRTAVEGLTNILERELKTK
INPgaii200_11004194	F063046	AGGAGG	VSKASIAAVLLALGVVSLLEGTNAMVVPPSDLQPALATLAAVETVALRKDRTITRHVVVRHR