NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ICCgaii200_c0412052

Scaffold ICCgaii200_c0412052


Overview

Basic Information
Taxon OID2228664021 Open in IMG/M
Scaffold IDICCgaii200_c0412052 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)544
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015523Metagenome / Metatranscriptome254Y
F035895Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
ICCgaii200_04120521F035895N/AGTGNKGNRIAFGTPTTDYGFMQGEYFAGRTPQTGAFTHI
ICCgaii200_04120522F015523N/AMENVAVVDQPKWPALDAVGTPAIMSFRMIWKATDEKIIYDDPQKQFRVEGYRATAQLEAQVKVPSIDFLWKSDPLSTSQAHFAIMGDEVNG

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