NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2225763305

Scaffold 2225763305


Overview

Basic Information
Taxon OID2222084011 Open in IMG/M
Scaffold ID2225763305 Open in IMG/M
Source Dataset NameCoastal lagoon microbial communities from Albufera, Spain - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity Miguel Hernandez
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1981
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location
Location NameSpain: La Albufera de Valencia
CoordinatesLat. (o)39.330917Long. (o)-0.343Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007748Metagenome / Metatranscriptome345N
F009057Metagenome / Metatranscriptome323Y

Sequences

Protein IDFamilyRBSSequence
2225182336F009057N/AMPTFRKFAFPDGATADKVLGEFLNPLDFAVAVGEIDKAVCVDVLFHDTCPEHLAAFVVWPEPCGVHSFSGWEEQYAADYQEFATQSQK
2225182338F007748GGAGVNLIETTIIGTVSAIVGGAVAWLTRGRFTADSLQVKQAQAVLAMWQATAEAQNKELTELRNELVVLRQRIECLETTIHTLESENATLK

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