Scaffold 2225762277

Overview

Basic Information

• Taxon OID: 2222084011
• Scaffold ID: 2225762277
• Source Dataset Name: Coastal lagoon microbial communities from Albufera, Spain - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University Miguel Hernandez
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1925
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location

• Location Name: Spain: La Albufera de Valencia
• Coordinates
  • Lat. (^o): 39.330917
  • Long. (^o): -0.343
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002488	Metagenome / Metatranscriptome	554	N
F018160	Metagenome / Metatranscriptome	236	N
F062571	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
2225179732	F018160	N/A	VVWRMANKDVLKFDAIFAMKAVEFLNYALLIHDILEAERQEAERMRRK
2225179734	F062571	N/A	MSISVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLVAPTAPSLTQTGFVEHSGFYSGYRLDFTQEYGNTPAVTGATTTVSGVMAFAGNLEQLELADWNLSPYFRVGLNFVISRPLTTQKNFTVYKGGHNFLAINATRYTALSGFDNWLVSARVNYKSVDYDFAVTPSLSGITDYNISAFCLWPCKPIGNHHRIERSGRGRFLHGAVFQRCNRGG
2225179735	F002488	GAGG	VQFFSDAIGGAKFTTFTFGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDRVRHDHLQQGLAGSFDFVYALNSDWLTDAESEWLIEMVRSGYVWLELNGQLVEAVVNANQYQFVTRRNDRLTQLQI