Scaffold 2225761752

Overview

Basic Information

• Taxon OID: 2222084011
• Scaffold ID: 2225761752
• Source Dataset Name: Coastal lagoon microbial communities from Albufera, Spain - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University Miguel Hernandez
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16053
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location

• Location Name: Spain: La Albufera de Valencia
• Coordinates
  • Lat. (^o): 39.330917
  • Long. (^o): -0.343
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001345	Metagenome / Metatranscriptome	718	N
F004837	Metagenome / Metatranscriptome	421	Y
F005845	Metagenome / Metatranscriptome	388	Y
F011581	Metagenome / Metatranscriptome	289	N

Sequences

Protein ID	Family	RBS	Sequence
2225177381	F004837	N/A	MTQDEYLLATKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALQYIYQEADQFAEANHHTVTHALTNQSPQQ
2225177382	F001345	N/A	MASADTIILDLYRSGEIRKACLTITGGDPLWRDLEQECVLILLEKDPAKILQIQSQGYFKFYVVRLLLNLYRGKNNQFAQKYRHHDLLEELDPDSPIPQSEYDSLMDDLWAIAEAEMDTWAKDGAFPYDKELLRLHLRTGNMKKLSRXTGIPYRSIIYSIDQAKAKIKAAIQSHGHADISPAD
2225177385	F005845	N/A	MKPTPTDFRRWQIHIRKECVNCDRPDRSETISPWKVNWTLLGXILQAKNA
2225177399	F011581	N/A	MPYHSTRPAKALTNALERLMIAISPADLEQNHALLCEYRRACELLGYDPAKAQWAGVHEVSASQLPTEQDHTVCYYPLLNPEE