Scaffold 2225760298

Overview

Basic Information

• Taxon OID: 2222084011
• Scaffold ID: 2225760298
• Source Dataset Name: Coastal lagoon microbial communities from Albufera, Spain - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University Miguel Hernandez
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18475
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (16.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location

• Location Name: Spain: La Albufera de Valencia
• Coordinates
  • Lat. (^o): 39.330917
  • Long. (^o): -0.343
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F006105	Metagenome / Metatranscriptome	381	Y
F009126	Metagenome / Metatranscriptome	322	N
F020667	Metagenome	222	Y
F034102	Metagenome	175	N

Sequences

Protein ID	Family	RBS	Sequence
2225173191	F006105	AGG	VIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNSTTDFTLLKSANLSSYTERYDKFSLAVGSIETGSYKYEVYDTSSTVAAAVAVVETGLAYVQVVSLTFNTYGNSIQYTVFGASDVEIFDQTFDPSFA
2225173199	F020667	N/A	VVDAAGFTDILAQNGGGWFQAPWWKLGPSIYVKKMVDLIFTEAGFRYSSTFFNSSFFNKLVMPYAAGTMPVNLSGSNILAQSTGNTGVFSELVEEKVLFSKDTPAPFYDNPGYWVASSSTFVAPSIDTRWNVRVSFTLSGSVASTNNNICRMAIRNPAQNTNFATAINFSLKKNVVSVIDFNNVTIPAFSTANIQFLVEWDGIGGFTQNFTILSGATIQWTCLENPSSIGTLDMRTALPADVKQSDLLQDLQKMFNLQFMPDPQDPKLLYIEPWKDFYSSGSVVDWSQKSDENAEQNLTNGDPNAYTNIVFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTGNFYGKGDKVVETLCGTLIPASFSTDKIVGRTWDIDGTLASGTIKALQTGYRLAQYNLIEGQTEWAYQYGVSSTVSGNVALSVGILKMPFVSHIDNPYSPNVDLTFGQPRLVYYNAVNASGNPFAYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLSEFVATTTTPIASDPEFLFNGPIDPDPVDPGYEPPVNPELPSEG
2225173201	F034102	N/A	LPGDSWLVSARVAYKSVNYDFAVTPNLSGTTDFNIQRFACGPGQLSGSIPAFSGAVEGDFYTVRFVSDLASQSDTTTFTFGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDFVYALNSDWLTDAESEWLIEMVRSGYVWLELNGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL
2225173202	F009126	N/A	MSISVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLIAPTAPSLTQTGFVDHSGFYSGYRLDFTQEYGNTPVVTGATTTVSGVMAFAGNLEQLELAGWNLGTFFKFQDYFFGCASINNARTIHGLQRGQQLPCYKWHKV
2225173205	F000557	N/A	MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQERAELFKAHAKIGDVWGVV