Scaffold 2221117098

Overview

Basic Information

• Taxon OID: 2209111019
• Scaffold ID: 2221117098
• Source Dataset Name: Grass soil microbial communities from Rothamsted Park, UK - FP1 and FP2 (Mercury 0.2g/kg) assembled
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: 454 Life Sciences
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 864
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location

• Location Name: Rothamsted, Harpenden, UK
• Coordinates
  • Lat. (^o): 51.804241
  • Long. (^o): -0.372114
  • Depth (m): 0 to .21

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005249	Metagenome / Metatranscriptome	407	N

Sequences

Protein ID	Family	RBS	Sequence
2221849578	F005249	GAG	MVKLTTKEDIALLVEEASEMFEETGCVPDVDGKKVRAEKIVPRAKRYILETIDNPKASYDATIWHSPGYTLVLSWLSQKWLKYCHKLAPTVLKDADLHLPKDQRKLCLDWAADELTRQITRRGQRFH