NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Meso_c1166954

Scaffold Meso_c1166954


Overview

Basic Information
Taxon OID2209111018 Open in IMG/M
Scaffold IDMeso_c1166954 Open in IMG/M
Source Dataset NameMesophilic bioreactor microbial communities at Bielefeld, Germany
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterWest Virginia State University
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)562
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Grass → Composting → Bioreactor → Solid Waste From Bioreactor → Microbial Communities From Bioreactor At West Virginia State University,Usa And At Bielefeld, Germany

Source Dataset Sampling Location
Location NameGermany: Werther, Bielefeld
CoordinatesLat. (o)52.09722606Long. (o)8.43561172Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067651Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Meso_11669541F067651N/ANQTTLHPRKTDLSGYEGLVVAMLEIMMRDLTIPDREIEISLRDSKEVIEQKKKKKGYKRSAYCFVRSEWFEDLCWFIGINPHPIRRYAIERYNESKKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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