Scaffold draft_c381100

Overview

Basic Information

• Taxon OID: 2209111016
• Scaffold ID: draft_c381100
• Source Dataset Name: Thermophilic bioreactor microbial communities at WVSU, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: West Virginia State University
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 503
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Grass → Composting → Bioreactor → Solid Waste From Bioreactor → Microbial Communities From Bioreactor At West Virginia State University,Usa And At Bielefeld, Germany

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054066	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
draft_3811002	F054066	N/A	LKAVMYRLMNKPYLDIRIYRGYREIARIVTPDNGMRRFVVEGIGAFVLPNEDQMLRQLHDSHAYYINYNINSSAPGEITYDLEPVAFVYPPLSPAEFQTELEAQTVADLLAETEKDMSWLWLLAGGAVLIFVLILIFGGV