Scaffold 2214614401

Overview

Basic Information

• Taxon OID: 2209111006
• Scaffold ID: 2214614401
• Source Dataset Name: Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1120
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070180	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
2213648873	F070180	N/A	VYSPVFDEIYYRMKSQAKSTLLAIIIPSCIAILLFYIGAYFHPDFFSLLNGLPGVIILSCSVIVVTKLLFYTKLERSEIHKFRSLILGIVFFLIGETLYFYQQYFLQIDIPYPSVADVPYLLANLIFSYFLISCVFSLLNRKSVNPLPIILVSPVAIFPIYLILSSAYDLAINESTELEFIVNALYYIFDGLMLITALIIILNLKKYDPFIFHWIFITVGLILLVIGDVGYTYFSIISESLIEEYEWLWSIIYAIGYLFLGIGIYWFDRIKNILEVKKINVFLEKDEMDRLKNSSKNEL