NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2212292385

Scaffold 2212292385


Overview

Basic Information
Taxon OID2209111004 Open in IMG/M
Scaffold ID2212292385 Open in IMG/M
Source Dataset NameMacrotermes natalensis queen gut microbiome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)927
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Macrotermes Natalensis Queen Gut → Macrotermes Natalensis Queen Gut Microbial Communities From Naboomspruit, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Naboomspruit
CoordinatesLat. (o)-24.5160467Long. (o)28.699288Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000162Metagenome1833Y
F005119Metagenome / Metatranscriptome411Y

Sequences

Protein IDFamilyRBSSequence
2212356581F005119GAGMRHNEVCACLYYSICKAIGVKMTDKWCIHMPKLVCEHEDVRVLWNREVHTDREVTANRPGIIIKTKKTQHAY
2212356582F000162GAGMNVKHEMHDYTSNNWYHWNINKRLKENFGGHTRKMFNRVTKRDSYTWNITHNTESAAVIVIVIVI

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