NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold QLA_contig00020.20

Scaffold QLA_contig00020.20


Overview

Basic Information
Taxon OID2199352018 Open in IMG/M
Scaffold IDQLA_contig00020.20 Open in IMG/M
Source Dataset NameSaline water microbial communities from Qinghai Lake, Tibetan Plateau -Sample 11630
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Illinois, Urbana-Champaign
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16396
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (24.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Water Microbial Communities From A Tibetan Plateau Lake

Source Dataset Sampling Location
Location NameQinghai Lake, Tibetan Plateau
CoordinatesLat. (o)36.381Long. (o)100.218Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001883Metagenome / Metatranscriptome622Y
F004366Metagenome / Metatranscriptome441Y
F010620Metagenome301Y
F038670Metagenome165N

Sequences

Protein IDFamilyRBSSequence
QLA_00005410F004366AGCAGMNSLQAIINEITTFYNAHLQVQKVGSDFQSEMFNFCTKDEKYPLIFIVPETVIPTENTTEFTFDIFCYDIIQKDRANIITILSDTQQILSDLNIYFTKGTNFAFDVIGMPTFTPLNNDLLDYAAGYQMAITLTVNDWTDCAVPI
QLA_00005420F001883N/AMGRYANTGEFNVLYPTRRRMIAILRRIIRQEVVDGENTLVESIRINAKVTGFQKLEIEILAAYYFIYLNNGVPQTANAYGPNGGSIAPRDFVAQFTDALASSGITAEIYSQYTEWLTKKYPLIEAIEVLERQYKLVYTFKALFAPPGFVQGTPLDV
QLA_00005440F038670N/AMITILGREIPHTLDELTIEQFETITEIGSNKEIDNIDRHLQIFASLGIAESEFYDYDVADFITIVKVFNEQPKSEYPVVETIELDGFTYTAQLKLTVRDTKLIESIAIKKPKGYISSILAIMFKADHLTPTEHYADAHLKLKAKHIGKLKACIAIPYVMFIAKKINKQVDDQLTQAVE
QLA_00005560F010620GAGMMKFLPLIALILLGSCSSAKKAQYHYKKALKHGLKLVTHSDTIRITALDSFVVVRNDTIVWEKYITTKDTIIQYNNIYVPKTKWQTRIEYRYKTKILKQDVLKYKYIYRDGKLKKAKTNWRLFFYGLLAGFLSSFVLRLLVKIYNPLR
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