Scaffold 2199820923

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199820923
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1426
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015472	Metagenome	254	Y
F072322	Metagenome	121	N
F074878	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
2199996622	F015472	N/A	MVVAGWRQVLFTERSCQVMAHSYLNQGGTRWVCDSKIQVVGIHNGKRYNKMRKPMFWEQLGNFAVCYVRVADNVYRGFTEDNNGVIELKLEKCYRVR
2199996623	F074878	AGGA	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK
2199996624	F072322	GGAGG	METVDFVNATEFFDAMELGHVESDEFLSKFTYGDIRTTFTLVSRGTFLSYLKSFITDCEDIYEKDVVMEALRDYNLSVDVRIKYVNIEA