Scaffold 2199808404

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199808404
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6618
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F027828	Metagenome / Metatranscriptome	193	Y
F031454	Metagenome / Metatranscriptome	182	Y
F061794	Metagenome / Metatranscriptome	131	Y
F081258	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
2199978502	F013631	AGGA	LVDLNTVFNYTASRWDWHDGNVNQMWIQEIEESPDCYRYIAVAYNPRKDATMVMSEPRCYADTLNWVRKFCGSFCILPQYC
2199978504	F081258	N/A	MTFTFPRLSAGIYEVQKDSNTVGFIRKVNAGKWMVADVVDTPQEVTKTLKDAKDACINLIIFDVVDTTSGDEYNDSVEVDKVNPELNKVLEGSLHCYKQIEGTDEFEEVSPSVFGFGGEPTLEPIEF
2199978505	F031454	GGA	MHESTLDLFCNHDSDEFADEYAMEIERKAAELEVTVDYYMMEFMF
2199978511	F061794	N/A	MPFTKKFPKSGETKHIRVPVVYADLVLELMELFERRFDVEKGKHLLKKYINNLG
2199978512	F027828	GGA	MMELTTETMLDTVLTMEEILTEKQLLALRDILYFYKEFELELYDYPQEDTLFTKTQRELFDIFDIK