Scaffold 2199798407

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199798407
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1888
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F001043	Metagenome / Metatranscriptome	794	Y
F005504	Metagenome / Metatranscriptome	398	Y
F071228	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
2199963787	F000450	AGGCGG	MGDRANYVFVDGAGDTICLYGHWAGYNMLGKLADAVIAARPRWTDESYATRIAISQLIGDQWNMETGWGLQVNSIGDNEHKIAVINWKDQTFSLHEQDDHRNLENKVLGMKNEAIFTMDLSAFCEKYALERLLV
2199963789	F001043	AGGA	MSDYKDGFQEGYKFAREEMIEKLREIDIADIDSWLLDRLSDMIESNKL
2199963791	F071228	AGG	MTDKWFKDTYLCTNCDALIEVTRKGEATNISHCLIRSTLLSVQDATILPTNERNKMETYGATITPAVPNEYNSNLLVTYKKIFNGETTYSTEKVVDIEWALEQGRRADDLYNGLKLKVNELEELLVELYNPNYTKEEALQQISELFGFELSKTVTVTGTINFEVTVQVPLDEIDNFDAHYKLGDELSLTSYGNDVEVNDWSIEDTDVDWN
2199963792	F005504	N/A	TGWGGEYEIVRGEVNELMEYQNRCYACQSYNTIEYCEEGCGEFCELCNQGSWQDEQAMAECSVHKVKV