Scaffold 2199791780

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199791780
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2090
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F010915	Metagenome / Metatranscriptome	297	Y
F018368	Metagenome / Metatranscriptome	235	N
F037694	Metagenome / Metatranscriptome	167	N
F045702	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
2199953667	F006546	N/A	MKWKYIGNRTGDAAKGEQYIVEADELTELYMKSLPYPQTVNVYVVQPPSPRNNWSKNNVGDIIKICNPYYEMATYSHPGFVPVKE
2199953668	F037694	N/A	MLNKNQAFLVNEFIRKNANRNLWEVSDKLYSLLSEITKAEQEIKNETETAAA
2199953669	F010915	GGA	MKQKLPPHNMVVVVQVGLDLYTLSYVKYEECDIHQCIKYDLSSEDVSQFLGNN
2199953670	F018368	N/A	MTITTLTTRGQKISNQIVSADVIEINQGPFSFTALTESITTEEDKIVIKYEVDDEICNHAITNDMLNNAHVEDGHIVFAWGTQLSISLYKLAVMNAVE
2199953672	F045702	N/A	MTITQTLNSTAGRFTTLVVNKGANTNKFCARITSATEKTVRFYDMNAEANRVVPTASVVYARSGKTQFGSLRK