Scaffold 2199785623

Overview

Basic Information

• Taxon OID: 2199352003
• Scaffold ID: 2199785623
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1303
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000211	Metagenome / Metatranscriptome	1583	Y
F005772	Metagenome	390	Y
F071988	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
2199942536	F071988	N/A	MVETVEPFKLHPTSMSYIYKVFEHLKQLWMGIWQHTHTITTTE
2199942537	F000211	N/A	VIEHLKQLWMGIWQHTHTVTTTEVSLDSGEFTEIQDDVSVEMIPVCYG
2199942538	F005772	N/A	MYAIDVGYSLKGSTASMIGYWDHFHNYIIYDFSKLSQIWGNLCGGNSVSMLPYLHPQLFKVSNT
2199942539	F000211	N/A	MTYIYKVFEHLKQLWMGIWQHIHTVTTTEVSPDLGELAEIIDDVSVEMIPVRYH
2199942540	F000211	N/A	VFEHLKQLWMGIWQHIHTFTTTEVSPDLGELAEILDDVSVEMIPLHYR
2199942541	F000211	N/A	VFEHLKQLWMGIWQHTHTVTTTEXSPDLGELAEILDDVSVEMIPXRYH
2199942542	F000211	N/A	SYIYKVFEHLKQLWMGIWQHTHTVTTTEVCQDLGEFTEILXXVSVEMIPLCYR