Scaffold 2199779240

Overview

Basic Information

• Taxon OID: 2199352003
• Scaffold ID: 2199779240
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1573
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053090	Metagenome / Metatranscriptome	141	N
F071999	Metagenome / Metatranscriptome	121	N
F102500	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
2199934272	F053090	N/A	VGLKLKYQFDEELMDPYITAKPKSNEDDELPAKKFKITDTKKISILEYSSVQLPVAPFIDYLEKYSKSFVDQCLTYNNSNKKTD
2199934273	F071999	AGG	VYVQTAEPTDFENVSRISFLPANFNIDEENFSSIPENSLVVLDDFSFKLANNKQEKINFLKVVNYILRHKKITLILVIHNLFGNNLANDILCAHHVFLSYSNLGYLIMR
2199934274	F102500	N/A	MRLGGPEALDFFQSVQKANFHFAYVNSARNFIINRVENLFNNTRRAIMFANKQTFLIHDAEQDCSQTLSSTEEKVNTTISDFIQSTYPKQKYLKIVANIFEKHNLVNDDLFFVNFPDIHLADFCSFINNKFDKKENVRMIKLCKYIQTQKIRLPNVCVKNSRAKKYLC