Scaffold GS313G0146KB_1113354002254

Overview

Basic Information

• Taxon OID: 2189573028
• Scaffold ID: GS313G0146KB_1113354002254
• Source Dataset Name: Estuarine microbial communities from Columbia River, sample from South Channel ETM site, CMGS313-FOS-0p8-ETM-15m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of South Carolina
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 935
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Columbia River estuary, South channel near Astoria
• Coordinates
  • Lat. (^o): 46.249
  • Long. (^o): -123.986
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004696	Metagenome	427	Y
F032282	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
GS313G0146KB_00350560	F032282	N/A	MNSNSSIVDIDIEKYNSIEREREKIMGDEKFIAWLNEYKIGSRIEVKDYRATELMQQYTNYPKWVASKY
GS313G0146KB_00350570	F004696	N/A	MDYAIKKLKQDEVVLMKKIKSLQDGKPKWAASEQLDEIRSAIQLLERYNNITEQDIENEDEYLKQIFELQPAKAKA