Scaffold GS312G0146KB_1113212353583

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold GS312G0146KB_1113212353583

Scaffold GS312G0146KB_1113212353583

Overview

Basic Information
Taxon OID	2189573027 Open in IMG/M
Scaffold ID	GS312G0146KB_1113212353583 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from Columbia River, sample from CR-7km from mouth, GS312-FOS-0p8-CR7-chlmax
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of South Carolina
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	617
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Columbia River Transect 7 km from mouth (CR7)
Coordinates	Lat. (^o)	46.167	Long. (^o)	-124.158	Alt. (m)		Depth (m)	15
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084735	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
GS312G0146KB_00344960	F084735	N/A	VKQLACQFRLLLGFFGLKPENKLDIHQSIFYFIYGTPGFSFGDVYDMPVHLKNFYLREFMGLKKKEKEQMDAAQPKQQSTIPRRFSPK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.