NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GZIR7W401AOVVD

Scaffold GZIR7W401AOVVD


Overview

Basic Information
Taxon OID2189573003 Open in IMG/M
Scaffold IDGZIR7W401AOVVD Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)500
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018414Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
FE2_05078900F018414GGAMCLSEAEISSIVNAGGGRYVGIVNAIPEKMESIILFVSPQTRTTLSIPISRLTVEAVRERLAESDAAFTEVGP
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