NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GZIGXIF01CM835

Scaffold GZIGXIF01CM835


Overview

Basic Information
Taxon OID2189573002 Open in IMG/M
Scaffold IDGZIGXIF01CM835 Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)531
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084195Metagenome / Metatranscriptome112N
F105763Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
FE1_07835290F105763N/ASFEGPELASAYRYHPFSVDEPEVGTDDVFLEGAGPWRVIDVQRTEVLVSDGNVLVVEAAA
FE1_07835300F084195N/AMSAEYDVARQQRLRRALEAIADAYGFTGELRRERIGEWWLYPNRSAMTASRRSRTSHGLDVKFDKEQVDEFRQLVAEAEHESS

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