Scaffold stn_contig08170

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold stn_contig08170

Scaffold stn_contig08170

Overview

Basic Information
Taxon OID	2166559019 Open in IMG/M
Scaffold ID	stn_contig08170 Open in IMG/M
Source Dataset Name	Stentor MTG 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Leibniz Institute
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	514
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Stentor Amethystinus → Stentor Amethystinus Microbial Communities From Lake Stechlin, Germany

Source Dataset Sampling Location
Location Name	Lake Stechlin Germany
Coordinates	Lat. (^o)	53.144075	Long. (^o)	13.02274	Alt. (m)		Depth (m)	68
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y

Sequences

Protein ID	Family	RBS	Sequence
stn_00022970	F000441	N/A	RKMKRRTKMRMSDTYINDQLNAAQKLLWSGSLHEVDEAHNIIAKLISDRIEQTNLT
stn_00022980	F000852	AGGA	MTTKREYLKQQGITVGARGRFSGAAKVALQEAVQKGITFTAEKPVSKAK

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